![]() ![]() This is one of the most powerful tools in PyMOL as it allows you to create different instances containing different parts of your system that you can proceed to customize as you wish. To this aim, we can exploit the selection tool that allows you to interact with specific parts of the molecule by selecting them, and then use the selections to perform actions on that precise group of atoms. It is great to observe and analyze the overall structures of biomolecules but of course, that is not sufficient as most of the time one would also like to operate certain actions only on a specific subset of atoms ( e.g., you may want to show a certain residue or the binding site of a protein in a different representation or color). PyMOL is a cross-platform molecular graphics system that is designed to provide an interactive, visual environment for exploring and analyzing 3D structures of proteins, nucleic acids, and small molecules.
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